Stem-loop ptr-mir-92b

Accession

MI0020575

Description

Pan troglodytes ptr-mir-92b precursor miRNA

Literature search

1 open access papers mention ptr-mir-92b
(1 sentences)

Sequence

27912 reads, 270.0 reads per million, 24 experiments

agcgggaucccgggccccgggcgggcgggAGGGACGGGACGCGGUGCAGUGUUguuuuuucccccgccaaUAUUGCACUCGUCCCGGCCUCCggcccccccggcccccc
...(((.....(((((..(((.((((.(((((..(((((((.((((((((((((.............))))))))))))))))))).))))).))))))).))))))))

Structure

agc   auccc     cc   c    g     GA       C            uuuuu 
   ggg     gggcc  ggg gggc ggAGG  CGGGACG GGUGCAGUGUUg     u
   |||     |||||  ||| |||| |||||  ||||||| ||||||||||||     c
   ccc     cccgg  ccc cccg CCUCC  GCCCUGC UCACGUUAUaac     c
---   -----     -c   -    g     -G       -            cgccc 

Annotation confidence High

Genome context

chr1: 133283049-133283157 [+]

Mature ptr-miR-92b-5p

• Accession: MIMAT0052414
• Description: Pan troglodytes ptr-miR-92b-5p mature miRNA
• Sequence: 30 - AGGGACGGGACGCGGUGCAGUGUU - 53
• Evidence: experimental ; Illumina [1]

Mature ptr-miR-92b-3p

• Accession: MIMAT0024028
• Description: Pan troglodytes ptr-miR-92b-3p mature miRNA
• Sequence: 71 - UAUUGCACUCGUCCCGGCCUCC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116