Stem-loop ptr-mir-3173

Accession

MI0020581

Description

Pan troglodytes ptr-mir-3173 precursor miRNA

Sequence

928 reads, 11.0 reads per million, 24 experiments

ugagucuuuguuggucuugggccagcuucccugCCCUGCCUGUUUUCUCCUUUGUgauuuuaugagaacAAAGGAGGAAAUAGGCAGGCCAgggaaacgcucucucucuccc
.((((....(((((((...)))))))(((((((.(((((((((((((((((((((..((....))..))))))))))))))))))))).)))))))..))))..........

Structure

---------u    cuuuguuggucuugggccagc       C                     ga  u 
          gagu                     uucccug CCUGCCUGUUUUCUCCUUUGU  uu u
          ||||                     ||||||| |||||||||||||||||||||  ||  
          cucg                     aagggAC GGACGGAUAAAGGAGGAAAca  ag a
cccucucucu    -------------------ca       C                     ag  u 

Annotation confidence High

Genome context

chr14: 80289673-80289784 [-]

Mature ptr-miR-3173-5p

• Accession: MIMAT0061154
• Description: Pan troglodytes ptr-miR-3173-5p mature miRNA
• Sequence: 34 - CCCUGCCUGUUUUCUCCUUUGU - 55
• Evidence: experimental ; Illumina [1]

Mature ptr-miR-3173-3p

• Accession: MIMAT0024034
• Description: Pan troglodytes ptr-miR-3173-3p mature miRNA
• Sequence: 70 - AAAGGAGGAAAUAGGCAGGCCA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116