Stem-loop ptr-mir-3200

Accession

MI0020583

Description

Pan troglodytes ptr-mir-3200 precursor miRNA

Sequence

agagagacaaagaaggagguggucgagggaaucugagaaggcgcacaagguuuguguccaauacaguccaCACCUUGCGCUACUCAGGUCUGcucgugcccucccaugau
..............(((((.(..((((.(.(((((((..((((((..((((((((((...)))))).....)))))))))).))))))).).))))..))))))......

Structure

agagagacaaagaa     u gu    g a       aa      ca    -----      c 
              ggagg g  cgag g aucugag  ggcgca  aggu     uugugu  
              ||||| |  |||| | |||||||  ||||||  ||||     |||||| c
              ccucc c  gcuc U UGGACUC  UCGCGU  UCCA     gacaua  
--------uaguac     - gu    G C       -A      --    Caccu      a 

Annotation confidence Not enough data

Genome context

chr22: 17307575-17307684 [+]

Mature ptr-miR-3200

• Accession: MIMAT0024036
• Description: Pan troglodytes ptr-miR-3200 mature miRNA
• Sequence: 71 - CACCUUGCGCUACUCAGGUCUG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116