Stem-loop ptr-mir-548o

Accession

MI0020601

Description

Pan troglodytes ptr-mir-548o precursor miRNA

Literature search

1 open access papers mention ptr-mir-548o
(2 sentences)

Sequence

uaucguuucuauguaaauauuuagauuggugcAAAAGUAAUUGCGGUUUUUGCCauuaaaaguaaugcggccaaaacugcaguuacuuuugcacccaccuaauacaucaaa
..........(((((.....((((...(((((((((((((((((((((((.(((((((....))))..))).)))))))))))))))))))))))...)))))))))....

Structure

uaucguuucu     aauau    auu                       U   --    a 
          augua     uuag   ggugcAAAAGUAAUUGCGGUUUU GCC  auua a
          |||||     ||||   ||||||||||||||||||||||| |||  ||||  
          uacau     aauc   ccacguuuucauugacgucaaaa cgg  uaau a
------aaac     -----    cac                       c   cg    g 

Annotation confidence Not enough data

Genome context

chr20: 40058768-40058878 [+]

Mature ptr-miR-548o

• Accession: MIMAT0024054
• Description: Pan troglodytes ptr-miR-548o mature miRNA
• Sequence: 33 - AAAAGUAAUUGCGGUUUUUGCC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116