Stem-loop ptr-mir-548o

Accession

MI0020601

Description

Pan troglodytes ptr-mir-548o precursor miRNA

Literature search

2 open access papers mention ptr-mir-548o
(3 sentences)

Sequence

119 reads, 2.0 reads per million, 22 experiments

uaucguuucuauguaaauauuuagauuggugcAAAAGUAAUUGCGGUUUUUGccauuaaaaguaaugcggCCAAAACUGCAGUUACUUUUGCacccaccuaauacaucaaa
..........(((((.....((((...(((((((((((((((((((((((.(((((((....))))..))).)))))))))))))))))))))))...)))))))))....

Structure

uaucguuucu     aauau    auu                       U   --    a 
          augua     uuag   ggugcAAAAGUAAUUGCGGUUUU Gcc  auua a
          |||||     ||||   ||||||||||||||||||||||| |||  ||||  
          uacau     aauc   ccaCGUUUUCAUUGACGUCAAAA Cgg  uaau a
------aaac     -----    cac                       C   cg    g 

Annotation confidence High

Genome context

chr20: 40058768-40058878 [+]

Mature ptr-miR-548o-5p

• Accession: MIMAT0024054
• Description: Pan troglodytes ptr-miR-548o-5p mature miRNA
• Sequence: 33 - AAAAGUAAUUGCGGUUUUUG - 52
• Evidence: experimental ; Illumina [1]

Mature ptr-miR-548o-3p

• Accession: MIMAT0052416
• Description: Pan troglodytes ptr-miR-548o-3p mature miRNA
• Sequence: 71 - CCAAAACUGCAGUUACUUUUGC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116