miRBase entry: ptr-mir-449c

Stem-loop ptr-mir-449c

Accession

MI0020618

Description

Pan troglodytes ptr-mir-449c precursor miRNA

Sequence

aaagcugggaugugucagguAGGCAGUGUAUUGCUAGCGGCUGUuaauaauuuuaacaguugcuaguugcacuccucucuguugcauucagaagcacgccccccaaagaaa
...(((.((((((..((((.(((.((((((..(((((((((((((((.....)))))))))))))))))))))))).))))..))))))...)))................

Structure

-------------aaa   --g      gu    u   C      UU               u 
                gcu   ggaugu  cagg AGG AGUGUA  GCUAGCGGCUGUuaa a
                |||   ||||||  |||| ||| ||||||  ||||||||||||||| a
                cga   cuuacg  gucu ucc ucacgu  ugaucguugacaauu u
aaagaaaccccccgca   aga      uu    c   -      --               u

Annotation confidence Not enough data

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Genome context

chr5: 59472899-59473009 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-449c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ptr-miR-449c

Accession	MIMAT0024071
Description	Pan troglodytes ptr-miR-449c mature miRNA
Sequence	21 - AGGCAGUGUAUUGCUAGCGGCUGU - 44
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116