Stem-loop ggo-let-7a

Accession

MI0020621

Description

Gorilla gorilla ggo-let-7a precursor miRNA

Literature search

4 open access papers mention ggo-let-7a
(6 sentences)

Sequence

1151109 reads, 98103.0 reads per million, 4 experiments

agaccgacugcccuuuggggUGAGGUAGUAGGUUGUAUAGUUuggggcucugcccugcuaugggauaaCUAUACAAUCUACUGUCUUUCcugaaguggcuguaauaucu
(((...((.(((((((((((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))))))))))).))).))....)))

Structure

   -ccg  u   -        U                     ---------      u 
aga    ac gcc cuuugggg GAGGUAGUAGGUUGUAUAGUU         uggggc  
|||    || ||| |||||||| |||||||||||||||||||||         |||||| c
ucu    ug cgg gaagucCU UUCUGUCAUCUAACAUAUCaa         gucccg  
   auaa  u   u        -                     uaggguauc      u 

Annotation confidence High

Genome context

chr22: 29760609-29760717 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-let-7a

Mature ggo-let-7a-5p

• Accession: MIMAT0024074
• Description: Gorilla gorilla ggo-let-7a-5p mature miRNA
• Sequence: 21 - UGAGGUAGUAGGUUGUAUAGUU - 42
• Evidence: experimental ; Illumina [1]

Mature ggo-let-7a-3p

• Accession: MIMAT0061276
• Description: Gorilla gorilla ggo-let-7a-3p mature miRNA
• Sequence: 69 - CUAUACAAUCUACUGUCUUUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116