Stem-loop ggo-let-7e

Accession

MI0020626

Description

Gorilla gorilla ggo-let-7e precursor miRNA

Literature search

2 open access papers mention ggo-let-7e
(3 sentences)

Sequence

176871 reads, 14228.0 reads per million, 4 experiments

accugccgcgccccccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccaaggagaucaCUAUACGGCCUCCUAGCUUUCCccaggcugcgcccugcacggga
.(((((.((((..((.(((..(((.((((((((((((((((.((((.(....))).......)))))))))))))))))).)))..))).))..))))...))).))..

Structure

-a  -   --c    cc  c   cU   G                U  -------  a g 
  cc ugc   gcgc  cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg g a
  || |||   ||||  || |||  ||| |||||||||||||||| ||       || |  
  gg acg   cgcg  gg ccC  UUC AUCCUCCGGCAUAUCa cu       cc c c
ag  c   ucc    uc  a   CU   G                -  agaggaa  - a 

Annotation confidence High

Genome context

chr19: 51003932-51004040 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-let-7e

Mature ggo-let-7e-5p

• Accession: MIMAT0024079
• Description: Gorilla gorilla ggo-let-7e-5p mature miRNA
• Sequence: 21 - UGAGGUAGGAGGUUGUAUAGUU - 42
• Evidence: experimental ; Illumina [1]

Mature ggo-let-7e-3p

• Accession: MIMAT0061279
• Description: Gorilla gorilla ggo-let-7e-3p mature miRNA
• Sequence: 66 - CUAUACGGCCUCCUAGCUUUCC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116