Stem-loop ggo-mir-140

Accession

MI0020628

Description

Gorilla gorilla ggo-mir-140 precursor miRNA

Literature search

1 open access papers mention ggo-mir-140
(2 sentences)

Sequence

188474 reads, 14406.0 reads per million, 4 experiments

gcccugugugugucucucucuguguccugcCAGUGGUUUUACCCUAUGGUAgguuacgucaugcuguucuACCACAGGGUAGAACCACGGAcaggauaccggggcacccu
((((((...............((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))))))))).....

Structure

-----      ugugugucucucucu        -  A             A       u  c  c 
     gcccug               guguccug cC GUGGUUUUACCCU UGGUAgg ua gu  
     ||||||               |||||||| || ||||||||||||| ||||||| || || a
     cggggc               cauaggac GG CACCAAGAUGGGA ACCAucu gu cg  
uccca      ---------------        A  -             C       u  -  u 

Annotation confidence High

Genome context

chr16: 60962926-60963035 [+]

Mature ggo-miR-140-5p

• Accession: MIMAT0061280
• Description: Gorilla gorilla ggo-miR-140-5p mature miRNA
• Sequence: 31 - CAGUGGUUUUACCCUAUGGUA - 51
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-140-3p

• Accession: MIMAT0024081
• Description: Gorilla gorilla ggo-miR-140-3p mature miRNA
• Sequence: 71 - ACCACAGGGUAGAACCACGGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116