Stem-loop ggo-mir-127

Accession

MI0020641

Description

Gorilla gorilla ggo-mir-127 precursor miRNA

Literature search

2 open access papers mention ggo-mir-127
(2 sentences)

Sequence

18958 reads, 1600.0 reads per million, 4 experiments

guaaaaggucucgcugugaucacugucuccagccugCUGAAGCUCAGAGGGCUCUGAUucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucggaagucucaucauc
......((((.......))))......(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).)))............

Structure

guaaaaggucucgcugugaucacuguc   a   u   G         G  C      --  a 
                           ucc gcc gCU AAGCUCAGA GG UCUGAU  uc g
                           ||| ||| ||| ||||||||| || ||||||  || a
                           agg ugg CGG UUCGAGUCU CC AGGCUa  ag a
---------------cuacuacucuga   c   U   -         G  U      cu  a 

Annotation confidence High

Genome context

chr14: 84900208-84900318 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ggo-mir-127

Mature ggo-miR-127-5p

• Accession: MIMAT0061288
• Description: Gorilla gorilla ggo-miR-127-5p mature miRNA
• Sequence: 37 - CUGAAGCUCAGAGGGCUCUGAU - 58
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-127-3p

• Accession: MIMAT0024094
• Description: Gorilla gorilla ggo-miR-127-3p mature miRNA
• Sequence: 71 - UCGGAUCCGUCUGAGCUUGGCU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116