Stem-loop ggo-mir-23b

Accession

MI0020642

Description

Gorilla gorilla ggo-mir-23b precursor miRNA

Sequence

19433 reads, 1344.0 reads per million, 4 experiments

gggcggcgcugcucucaggugcucuggcugcuUGGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCAcgcaaccacgaccuug
(((((....)))))..((((....(((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).)))..))))..

Structure

gggcggcgcugcucuc    gcuc   c   u   --          -  C      gugacu 
                aggu    ugg ugc UGG  GUUCCUGGCA UG UGAUUU      u
                ||||    ||| ||| |||  |||||||||| || ||||||       
                ucca    acc acg ACC  UAGGGACCGU AC ACUAaa      a
--------------gu    --gc   a   c   AU          U  -      auuaga 

Annotation confidence High

Genome context

chr9: 77106210-77106317 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-23b

Mature ggo-miR-23b-5p

• Accession: MIMAT0061289
• Description: Gorilla gorilla ggo-miR-23b-5p mature miRNA
• Sequence: 33 - UGGGUUCCUGGCAUGCUGAUUU - 54
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-23b-3p

• Accession: MIMAT0024095
• Description: Gorilla gorilla ggo-miR-23b-3p mature miRNA
• Sequence: 71 - AUCACAUUGCCAGGGAUUACCA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116