Stem-loop ggo-mir-138

Accession

MI0020645

Description

Gorilla gorilla ggo-mir-138 precursor miRNA

Literature search

1 open access papers mention ggo-mir-138
(1 sentences)

Sequence

7290 reads, 622.0 reads per million, 4 experiments

aguucugguaucguugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagcgcauccucuuacccgGCUAUUUCACGACACCAGGGUugcaucauacccauccucucca
......(((((.(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).))))))...........

Structure

-----aguucu     c u   u  AG             UCA     -ac   c  cg 
           gguau g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
           ||||| | ||| ||  |||||||||||||   |||||   ||| ||   
           ccaua c acg UG  GACCACAGCACUU   UCGgc   uuc uc  a
accucuccuac     - u   u  -G             -UA     cca   -  cu 

Annotation confidence High

Genome context

chr16: 47496608-47496717 [+]

Mature ggo-miR-138-5p

• Accession: MIMAT0024098
• Description: Gorilla gorilla ggo-miR-138-5p mature miRNA
• Sequence: 21 - AGCUGGUGUUGUGAAUCAGGCCG - 43
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-138-3p

• Accession: MIMAT0061292
• Description: Gorilla gorilla ggo-miR-138-3p mature miRNA
• Sequence: 68 - GCUAUUUCACGACACCAGGGU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116