miRBase entry: ggo-mir-342

Stem-loop ggo-mir-342


Accession
MI0020648
Description
Gorilla gorilla ggo-mir-342 precursor miRNA


Sequence

5842 reads, 458.0 reads per million, 4 experiments
gccaaccugugaaacugggcgcaaggugAGGGGUGCUAUCUGUGAUUGAGGgacaugguuaauggaauugUCUCACACAGAAAUCGCACCCGUcaccuuggccuacuuauca
.........(((((.(((((.((((((((.((((((..((((((..(((((.((((.....)))....).)))))))))))....)))))).))))))))))))).)).)))

Structure
gccaaccug   -  c     g        G      --UA      AU     g ----   g 
         uga aa ugggc caaggugA GGGUGC    UCUGUG  UGAGG a    cau g
         ||| || ||||| |||||||| ||||||    ||||||  ||||| |    ||| u
         acu uu auccg guuccacU CCCACG    AGACAC  ACUCU u    gua u
---------   a  c     -        G      CUAA      --     g uaag   a 


Annotation confidence High
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Genome context
chr14: 84128574-84128685 [+]

Database links

Mature ggo-miR-342-5p

Accession MIMAT0061293
Description Gorilla gorilla ggo-miR-342-5p mature miRNA
Sequence 29 - AGGGGUGCUAUCUGUGAUUGAGG - 51
Evidence experimental
Illumina [1]

Mature ggo-miR-342-3p

Accession MIMAT0024101
Description Gorilla gorilla ggo-miR-342-3p mature miRNA
Sequence 71 - UCUCACACAGAAAUCGCACCCGU - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116