Stem-loop ggo-mir-485

Accession

MI0020649

Description

Gorilla gorilla ggo-mir-485 precursor miRNA

Literature search

1 open access papers mention ggo-mir-485
(1 sentences)

Sequence

7077 reads, 675.0 reads per million, 4 experiments

uucaugugugguacuuggagAGAGGCUGGCCGUGAUGAAUUCGauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagugucaaauucugccucggagggcuu
........(((((((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))))))......((((....))))..

Structure

------------uucaugug       u         CU       -    A    auuc 
                    ugguacu ggagAGAGG  GGCCGUG AUGA UUCG    a
                    ||||||| |||||||||  ||||||| |||| ||||    u
                    acuguga uuUCUCUCC  UCGGCAC UACU Gagc    c
uucgggaggcuccgucuuaa       u         UC       A    -    gaaa 

Annotation confidence High

Genome context

chr14: 85078439-85078547 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ggo-mir-485

Mature ggo-miR-485-5p

• Accession: MIMAT0024102
• Description: Gorilla gorilla ggo-miR-485-5p mature miRNA
• Sequence: 21 - AGAGGCUGGCCGUGAUGAAUUCG - 43
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-485-3p

• Accession: MIMAT0061294
• Description: Gorilla gorilla ggo-miR-485-3p mature miRNA
• Sequence: 58 - GUCAUACACGGCUCUCCUCUCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116