Stem-loop ggo-mir-139

Accession

MI0020653

Description

Gorilla gorilla ggo-mir-139 precursor miRNA

Sequence

8324 reads, 708.0 reads per million, 4 experiments

cgggacuggcucagguguauUCUACAGUGCACGUGUCUCCAGUguggcucggaggcUGGAGACGCGGCCCUGUUGGAGUaacaacugaagccggagucugcgaagggugggc
.....(((((((((.((((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))).))).))).)))))).((((((.....))))))

Structure

-------------cggga      -   g   -      -   U  A            g gg 
                  cuggcu cag ugu auUCUA CAG GC CGUGUCUCCAGU u  c
                  |||||| ||| ||| |||||| ||| || |||||||||||| |  u
                  ggccga guc aca UGAGGU GUC CG GCGCAGAGGUcg a  c
cgggugggaagcgucuga      a   a   a      U   C  -            g gg 

Annotation confidence High

Genome context

chr11: 71680770-71680881 [-]

Mature ggo-miR-139-5p

• Accession: MIMAT0024106
• Description: Gorilla gorilla ggo-miR-139-5p mature miRNA
• Sequence: 21 - UCUACAGUGCACGUGUCUCCAGU - 43
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-139-3p

• Accession: MIMAT0061295
• Description: Gorilla gorilla ggo-miR-139-3p mature miRNA
• Sequence: 57 - UGGAGACGCGGCCCUGUUGGAGU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116