miRBase entry: ggo-mir-889

Stem-loop ggo-mir-889

Accession

MI0020662

Description

Gorilla gorilla ggo-mir-889 precursor miRNA

Sequence

uucuugauggcacaguucuuuggugcuuaaagaauggcuguccguaguauggucucuauauuuaugaugaUUAAUAUCGGACAACCAUUGuuuuaguauccaaauuugcu
........((((.((((...(((((((.(((.(((((.((((((..((.(((((((.........)).)))))))..)))))).))))).))).)))).)))))))))))

Structure

uucuugau    c    cuu   -    u   g     c      ua  a     -  uau 
        ggca aguu   ugg ugcu aaa aaugg uguccg  gu ugguc uc   a
        |||| ||||   ||| |||| ||| ||||| ||||||  || ||||| ||   u
        ucgu uuaa   acc auga uuu UUACC ACAGGC  UA AUUag ag   u
--------    -    ---   u    u   G     A      UA  -     u  uau

Annotation confidence Not enough data

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Genome context

chr14: 85070907-85071016 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ggo-mir-889

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-889

Accession	MIMAT0024115
Description	Gorilla gorilla ggo-miR-889 mature miRNA
Sequence	71 - UUAAUAUCGGACAACCAUUG - 90
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116