miRBase entry: ggo-mir-34c

Stem-loop ggo-mir-34c

Accession

MI0020670

Description

Gorilla gorilla ggo-mir-34c precursor miRNA

Sequence

uuucuaugagucuaguuacuAGGCAGUGUAGUUAGCUGAUUGcuaauaguaccaaucacuaaccacacggccagguaaaaagauuugggaauucguccaaaugagcug
.((((..((((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))).))))(((((....)))))...

Structure

----------------u    au      ag     A   A    A     C      c  a 
                 uucu  gagucu  uuacu GGC GUGU GUUAG UGAUUG ua u
                 ||||  ||||||  ||||| ||| |||| ||||| |||||| ||  
                 aagg  uuuaga  aaugg ccg caca caauc acuaac au a
gucgaguaaaccugcuu    -g      aa     a   g    c     -      c  g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr11: 111455000-111455107 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-34c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-34c

Accession	MIMAT0024123
Description	Gorilla gorilla ggo-miR-34c mature miRNA
Sequence	21 - AGGCAGUGUAGUUAGCUGAUUG - 42
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116