miRBase entry: ggo-mir-338

Stem-loop ggo-mir-338

Accession

MI0020672

Description

Gorilla gorilla ggo-mir-338 precursor miRNA

Sequence

cgucagccccagacgccgcacggcuguccucuccaacaauauccuggugcugagugaugacucaggcgacUCCAGCAUCAGUGAUUUUGUUGAagagggcagcugccag
((((.......)))).....((((((((((((.((((((.(((((((((((((((.............))).))))))))).))).)))))).))))))))))))....

Structure

cgucagccccagacgccgca            c      u   -         -   gauga 
                    cggcuguccucu caacaa auc cuggugcug agu     c
                    |||||||||||| |||||| ||| ||||||||| |||     u
                    gucgacgggaga GUUGUU UAG GACUACGAC Uca     c
----------------gacc            A      U   U         C   gcgga

Annotation confidence Not enough data

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Genome context

chr5: 1923676-1923784 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-338

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-338

Accession	MIMAT0024125
Description	Gorilla gorilla ggo-miR-338 mature miRNA
Sequence	71 - UCCAGCAUCAGUGAUUUUGUUGA - 93
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116