miRBase entry: ggo-mir-532

Stem-loop ggo-mir-532


Accession
MI0020678
Description
Gorilla gorilla ggo-mir-532 precursor miRNA


Sequence

2068 reads, 135.0 reads per million, 4 experiments
ccgacgugcuuucucuccucCAUGCCUUGAGUGUAGGACCGUuggcaucuuaauuacCCUCCCACACCCAAGGCUUGCAgaagagcgagccuucucuucccucucuagugc
..((.(.((((.((((.((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)).)))).))))).)).................

Structure
---------------cc  c u    u    c  c  U      A    A   CC  uggca 
                 ga g gcuu cucu cu CA GCCUUG GUGU GGA  GU     u
                 || | |||| |||| || || |||||| |||| |||  ||     c
                 cu c cgag gaga gA GU CGGAAC CACA CCU  ca     u
cgugaucucucccuucu  u -    c    a  C  U      C    C   CC  uuaau 


Annotation confidence High
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Genome context
chrX: 50437081-50437191 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ggo-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-532-5p

Accession MIMAT0024131
Description Gorilla gorilla ggo-miR-532-5p mature miRNA
Sequence 21 - CAUGCCUUGAGUGUAGGACCGU - 42
Evidence experimental
Illumina [1]

Mature ggo-miR-532-3p

Accession MIMAT0061308
Description Gorilla gorilla ggo-miR-532-3p mature miRNA
Sequence 58 - CCUCCCACACCCAAGGCUUGCA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116