Stem-loop ggo-mir-193b

Accession

MI0020685

Description

Gorilla gorilla ggo-mir-193b precursor miRNA

Literature search

1 open access papers mention ggo-mir-193b
(1 sentences)

Sequence

2230 reads, 139.0 reads per million, 4 experiments

ggagguuguggucucagaauCGGGGUUUUGAGGGCGAGAUGAguuuauguuuuauccAACUGGCCCUCAAAGUCCCGCUuuuggggucauucuggacagcgagggacucagg
.(((...((((((((((((.(((((((((((((((.((.((.((.........)).)).)).))))))))))))))).))))))))))))(((.(....).)))..)))...

Structure

--g   -------------guu            u               G  A  A  uua 
   gag                guggucucagaa CGGGGUUUUGAGGGC AG UG gu   u
   |||                |||||||||||| ||||||||||||||| || || ||   g
   cuc                uacugggguuuU GCCCUGAAACUCCCG UC Ac ua   u
gga   agggagcgacaggucu            C               G  A  c  uuu 

Annotation confidence High

Genome context

chr16: 14794087-14794198 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-193b

Mature ggo-miR-193b-5p

• Accession: MIMAT0024138
• Description: Gorilla gorilla ggo-miR-193b-5p mature miRNA
• Sequence: 21 - CGGGGUUUUGAGGGCGAGAUGA - 42
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-193b-3p

• Accession: MIMAT0061311
• Description: Gorilla gorilla ggo-miR-193b-3p mature miRNA
• Sequence: 58 - AACUGGCCCUCAAAGUCCCGCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116