Stem-loop ggo-mir-874

Accession

MI0020687

Description

Gorilla gorilla ggo-mir-874 precursor miRNA

Sequence

980 reads, 80.0 reads per million, 4 experiments

gcuccaucggaugaauuguugguguuagcccugCGGCCCCACGCACCAGGGUAAgagagacucucgcuucCUGCCCUGGCCCGAGGGACCGAcuggcugggccugccuucug
..(((...))).(((..((.(((..(((((...(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).)))...))))).))).)).)))..

Structure

gcuccaucggau   uu  u   gu     cug   C   A  CA        ---  a   a 
            gaa  gu ggu  uagcc   CGG CCC CG  CCAGGGUA   Ag gag  
            |||  || |||  |||||   ||| ||| ||  ||||||||   || ||| c
            cuu  cg ccg  gucgg   GCC GGG GC  GGUCCCGU   uc cuc  
----------gu   -c  u   -g     ucA   A   A  CC        Ccu  g   u 

Annotation confidence High

Genome context

chr5: 121117890-121118001 [-]

Mature ggo-miR-874-5p

• Accession: MIMAT0061313
• Description: Gorilla gorilla ggo-miR-874-5p mature miRNA
• Sequence: 34 - CGGCCCCACGCACCAGGGUAA - 54
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-874-3p

• Accession: MIMAT0024140
• Description: Gorilla gorilla ggo-miR-874-3p mature miRNA
• Sequence: 71 - CUGCCCUGGCCCGAGGGACCGA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116