Stem-loop ggo-mir-149

Accession

MI0020691

Description

Gorilla gorilla ggo-mir-149 precursor miRNA

Literature search

1 open access papers mention ggo-mir-149
(2 sentences)

Sequence

688 reads, 101.0 reads per million, 2 experiments

ucccaggccggcgcccgagcUCUGGCUCCGUGUCUUCACUCCCgugcuuguccgaggaggGAGGGAGGGACGGGGGCUGUGCuggggcggccggaacaacgcgggucgc
.(((..((((((((((.(((.(.(.((((((.(((((.(((((.(.(((....))).))))))))))).)))))).).).))).)))).))))).....)..)))....

Structure

---u   ag -----     -    g   U U G      G     A     g g   g 
    ccc  g     ccggc gccc agc C G CUCCGU UCUUC CUCCC u cuu u
    |||  |     ||||| |||| ||| | | |||||| ||||| ||||| | |||  
    ggg  c     ggccg cggg uCG G C GGGGCA GGAGG GAGgg a gag c
cgcu   cg aacaa     g    g   U U G      G     -     - g   c 

Annotation confidence High

Genome context

chr2B: 133820924-133821032 [+]

Mature ggo-miR-149-5p

• Accession: MIMAT0024144
• Description: Gorilla gorilla ggo-miR-149-5p mature miRNA
• Sequence: 21 - UCUGGCUCCGUGUCUUCACUCCC - 43
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-149-3p

• Accession: MIMAT0061314
• Description: Gorilla gorilla ggo-miR-149-3p mature miRNA
• Sequence: 61 - GAGGGAGGGACGGGGGCUGUGC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116