Stem-loop ggo-mir-574

Accession

MI0020709

Description

Gorilla gorilla ggo-mir-574 precursor miRNA

Literature search

1 open access papers mention ggo-mir-574
(2 sentences)

Sequence

987 reads, 59.0 reads per million, 4 experiments

gcgcggccgagggcccugcgugggugcgggcgugUGAGUGUGUGUGUGUGAGUGUGUgucgcuccgggucCACGCUCAUGCACACACCCACAcgcccacacucagggucu
(((.((((...)))).))).((((((.(((((((((.(.(((((((((((((((((.(.(.(....)).)))))))))))))))))))))))))))).))))))......

Structure

gcgcggccgagggcccugcg      c         A U                 U u g u 
                    ugggug gggcgugUG G GUGUGUGUGUGAGUGUG g c c c
                    |||||| ||||||||| | ||||||||||||||||| | | |  
                    acucac cccgcACAC C CACACACGUACUCGCAC c g g c
--------------ucuggg      a         - -                 - u - g 

Annotation confidence High

Genome context

chr4: 38590506-38590615 [+]

Mature ggo-miR-574-5p

• Accession: MIMAT0061324
• Description: Gorilla gorilla ggo-miR-574-5p mature miRNA
• Sequence: 35 - UGAGUGUGUGUGUGUGAGUGUGU - 57
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-574-3p

• Accession: MIMAT0024162
• Description: Gorilla gorilla ggo-miR-574-3p mature miRNA
• Sequence: 71 - CACGCUCAUGCACACACCCACA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116