Stem-loop ggo-mir-873

Accession

MI0020714

Description

Gorilla gorilla ggo-mir-873 precursor miRNA

Literature search

1 open access papers mention ggo-mir-873
(1 sentences)

Sequence

366 reads, 32.0 reads per million, 4 experiments

gaauaaguuugugugcauuuGCAGGAACUUGUGAGUCUCCUauugaaaaugaacaGGAGACUGAUGAGUUCCCGGGAacacccacaaaucuuccuacucauuucuacugc
(((...(((((((.(..(((.(.(((((((((.((((((((.((.......)).)))))))).))))))))).).)))..).))))))).))).................

Structure

-----------------   uaa       u ca   G A         G        a  ga 
                 gaa   guuugug g  uuu C GGAACUUGU AGUCUCCU uu  a
                 |||   ||||||| |  ||| | ||||||||| |||||||| ||  a
                 cuu   uaaacac c  aAG G CCUUGAGUA UCAGAGGa aa  a
cgucaucuuuacucauc   --c       c ac   G C         G        c  gu 

Annotation confidence Medium

Genome context

chr9: 20687345-20687454 [+]

Mature ggo-miR-873-5p

• Accession: MIMAT0024167
• Description: Gorilla gorilla ggo-miR-873-5p mature miRNA
• Sequence: 21 - GCAGGAACUUGUGAGUCUCCU - 41
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-873-3p

• Accession: MIMAT0061326
• Description: Gorilla gorilla ggo-miR-873-3p mature miRNA
• Sequence: 56 - GGAGACUGAUGAGUUCCCGGGA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116