Stem-loop ggo-mir-142

Accession

MI0020724

Description

Gorilla gorilla ggo-mir-142 precursor miRNA

Literature search

1 open access papers mention ggo-mir-142
(1 sentences)

Sequence

1913 reads, 121.0 reads per million, 4 experiments

acagacagacagugcagucaCCCAUAAAGUAGAAAGCACUAcuaacagcacuggaggguGUAGUGUUUCCUACUUUAUGGAugaguguacugugggcuucggagaucacgc
..((.(..((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))))))..))).............

Structure

-----------ac  a ag        g   C           A         uaa ag a 
             ag c  acagugca uca CCAUAAAGUAG AAGCACUAc   c  c c
             || |  |||||||| ||| ||||||||||| |||||||||   |  |  
             uc g  ugucaugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
cgcacuagaggcu  - gg        g   A           C         -ug ga g 

Annotation confidence High

Genome context

chr5: 25044891-25045001 [+]

Mature ggo-miR-142-5p

• Accession: MIMAT0024177
• Description: Gorilla gorilla ggo-miR-142-5p mature miRNA
• Sequence: 21 - CCCAUAAAGUAGAAAGCACUA - 41
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-142-3p

• Accession: MIMAT0061331
• Description: Gorilla gorilla ggo-miR-142-3p mature miRNA
• Sequence: 60 - GUAGUGUUUCCUACUUUAUGGA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116