Stem-loop ggo-mir-197

Accession

MI0020727

Description

Gorilla gorilla ggo-mir-197 precursor miRNA

Literature search

1 open access papers mention ggo-mir-197
(1 sentences)

Sequence

207 reads, 16.0 reads per million, 4 experiments

ccugcuggaaucugugcucugggggcugugcCGGGUAGAGAGGGCAGUGGGAGguaagagcucuucacccUUCACCACCUUCUCCACCCAGCauggccggcacacuuugg
((....))....((((((.....((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))))))))))))))......

Structure

ccugcuggaauc      cuggg        C    A       CA     A   -   a 
            ugugcu     ggcugugc GGGU GAGAGGG  GUGGG Ggu aag g
            ||||||     |||||||| |||| |||||||  ||||| ||| |||  
            acacgg     ccgguaCG CCCA CUCUUCC  CACUU cca uuc c
------gguuuc      -----        A    C       AC     c   c   u 

Annotation confidence High

Genome context

chr1: 110985977-110986086 [+]

Mature ggo-miR-197-5p

• Accession: MIMAT0061334
• Description: Gorilla gorilla ggo-miR-197-5p mature miRNA
• Sequence: 32 - CGGGUAGAGAGGGCAGUGGGAG - 53
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-197-3p

• Accession: MIMAT0024180
• Description: Gorilla gorilla ggo-miR-197-3p mature miRNA
• Sequence: 71 - UUCACCACCUUCUCCACCCAGC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116