miRBase entry: ggo-mir-380

Stem-loop ggo-mir-380

Accession

MI0020742

Description

Gorilla gorilla ggo-mir-380 precursor miRNA

Sequence

ucuccaagguaccugaaaagaugguugaccauagaacaugcgcuaucucugugucgUAUGUAAUAUGGUCCACAUCuucucaauaucaaauucagucauagagggcuuccc
.......((((..(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).))).))))......((((......))))....

Structure

-----------------ucuccaa    cc   a      guu       ga       c   c 
                        ggua  uga aagaug   gaccaua  acaugcg uau u
                        ||||  ||| ||||||   |||||||  ||||||| |||  
                        cuau  acu uuCUAC   CUGGUAU  UGUAUgc gug c
cccuucgggagauacugacuuaaa    -a   c      -AC       AA       u   u

Annotation confidence Not enough data

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Genome context

chr14: 85048332-85048442 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ggo-mir-380

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-380

Accession	MIMAT0024195
Description	Gorilla gorilla ggo-miR-380 mature miRNA
Sequence	57 - UAUGUAAUAUGGUCCACAUC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116