Stem-loop ggo-mir-503

Accession

MI0020750

Description

Gorilla gorilla ggo-mir-503 precursor miRNA

Literature search

1 open access papers mention ggo-mir-503
(23 sentences)

Sequence

437 reads, 27.0 reads per million, 4 experiments

gcccgcgcucagccgugcccUAGCAGCGGGAACAGUUCUGCAGugagcgaucggugcucuGGAGUAUUGUUUCCGCUGCCAGGguaagucugggacugccguucgggccuacc
((((((((((((.(.((((((.((((((((((((((.((.((..(((((.....))))))).)).)))))))))))))).)))))).).))))).....))..))))).....

Structure

-----     --  -----     c g      A              U  G  Gu     a 
     gcccg  cg     cucag c ugcccU GCAGCGGGAACAGU CU CA  gagcg u
     |||||  ||     ||||| | |||||| |||||||||||||| || ||  ||||| c
     cgggc  gc     ggguc g augGGA CGUCGCCUUUGUUA GA Gu  cucgu g
ccauc     uu  cguca     u a      C              U  G  --     g 

Annotation confidence High

Genome context

chrX: 134601698-134601810 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ggo-mir-503

Mature ggo-miR-503-5p

• Accession: MIMAT0024203
• Description: Gorilla gorilla ggo-miR-503-5p mature miRNA
• Sequence: 21 - UAGCAGCGGGAACAGUUCUGCAG - 43
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-503-3p

• Accession: MIMAT0061341
• Description: Gorilla gorilla ggo-miR-503-3p mature miRNA
• Sequence: 61 - GGAGUAUUGUUUCCGCUGCCAGG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116