Stem-loop ggo-mir-488

Accession

MI0020777

Description

Gorilla gorilla ggo-mir-488 precursor miRNA

Sequence

163 reads, 30.0 reads per million, 2 experiments

aauuucagagaaucaucucuCCCAGAUAAUGGCACUCUCAaacaaguuuccaaauuguUUGAAAGGCUAUUUCUUGGUcagaugacucucaauuucuucuggaagacuca
.......((((.((((((..((.(((.((((((.((.((((((((.........)))))))).))))))))))).))..)))))).))))..((((....))))......

Structure

-------------aauuuca    a      cu  C   U      A  C        guu 
                    gaga ucaucu  CC AGA AAUGGC CU UCAaacaa   u
                    |||| ||||||  || ||| |||||| || ||||||||   c
                    cucu aguaga  GG UCU UUAUCG GA AGUUuguu   c
acucagaaggucuucuuuaa    c      cU  U   -      -  A        aaa 

Annotation confidence High

Genome context

chr1: 156130256-156130365 [-]

Mature ggo-miR-488-5p

• Accession: MIMAT0024230
• Description: Gorilla gorilla ggo-miR-488-5p mature miRNA
• Sequence: 21 - CCCAGAUAAUGGCACUCUCA - 40
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-488-3p

• Accession: MIMAT0061347
• Description: Gorilla gorilla ggo-miR-488-3p mature miRNA
• Sequence: 59 - UUGAAAGGCUAUUUCUUGGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116