miRBase entry: ggo-mir-1250

Stem-loop ggo-mir-1250

Accession

MI0020782

Description

Gorilla gorilla ggo-mir-1250 precursor miRNA

Sequence

ucccgcuggccuggcaggugACGGUGCUGGAUGUGGCCUUuuugccuuuucuaaaggccacguuuuccagcccauucaaccuuccagagcccucugagguggccgcaggc
..((((((((((((.((((((.((.((((((((((((((((...........))))))))))...))))))))..)).)))).)))).)))......)))))........

Structure

------uc     ------   -    c    -  -C  U      ---          uugc 
        ccgcu      ggc cugg aggu gA  GG GCUGGA   UGUGGCCUUu    c
        |||||      ||| |||| |||| ||  || ||||||   ||||||||||    u
        ggugg      ccg gacc ucca cu  cc cgaccu   gcaccggaaa    u
cggacgcc     agucuc   a    u    a  ua  -      uuu          ucuu

Annotation confidence Not enough data

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Genome context

chr5: 1916389-1916498 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-1250

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-1250

Accession	MIMAT0024235
Description	Gorilla gorilla ggo-miR-1250 mature miRNA
Sequence	21 - ACGGUGCUGGAUGUGGCCUU - 40
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116