miRBase entry: ggo-mir-450a

Stem-loop ggo-mir-450a


Accession
MI0020784
Description
Gorilla gorilla ggo-mir-450a precursor miRNA


Sequence

120 reads, 7.0 reads per million, 4 experiments
aaagaaagaugcuaaacuauUUUUGCGAUGUGUUCCUAAUAUguaauauaaauguAUUGGGGACAUUUUGCAUUCAUaguuuuguaucaauaauauggggaaaagaggcua
.......(((((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).))))).......................

Structure
----------------aaagaaa     u       UUU     U               aa 
                       gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
                       ||||| |||||||   ||||| |||||||||||||||  a
                       cuaug uuugaUA   ACGUU UACAGGGGUUAugua  u
aucggagaaaagggguauaauaa     u       CUU     U               aa 


Annotation confidence High
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Genome context
chrX: 134595905-134596015 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ggo-mir-450a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-450a-5p

Accession MIMAT0024237
Description Gorilla gorilla ggo-miR-450a-5p mature miRNA
Sequence 21 - UUUUGCGAUGUGUUCCUAAUAU - 42
Evidence experimental
Illumina [1]

Mature ggo-miR-450a-3p

Accession MIMAT0061349
Description Gorilla gorilla ggo-miR-450a-3p mature miRNA
Sequence 56 - AUUGGGGACAUUUUGCAUUCAU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116