miRBase entry: ggo-mir-654

Stem-loop ggo-mir-654

Accession

MI0020785

Description

Gorilla gorilla ggo-mir-654 precursor miRNA

Sequence

agguggggcugagcccuccaggguaaguggaaagaUGGUGGGCCGCAGAACAUGUGCugaguucgugccauaugucugcugaccaucaccuuuagaagccccuuuucgc
....((((((..((((....))))......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))...)))))).......

Structure

---aggu      gagcccuccaggguaagugg    a      G C     A      - uga 
       ggggcu                    aaag UGGUGG C GCAGA CAUGUG C   g
       ||||||                    |||| |||||| | ||||| |||||| |   u
       ccccga                    uuuc acuacc g cgucu guauac g   u
cgcuuuu      -----------------aga    c      a u     -      c ugc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr14: 85063234-85063342 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from ggo-mir-654

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-654

Accession	MIMAT0024238
Description	Gorilla gorilla ggo-miR-654 mature miRNA
Sequence	36 - UGGUGGGCCGCAGAACAUGUGC - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116