miRBase entry: ggo-mir-517c

Stem-loop ggo-mir-517c


Accession
MI0020802
Description
Gorilla gorilla ggo-mir-517c precursor miRNA


Sequence

12 reads, 2.0 reads per million, 2 experiments
ugucaaaaaaaagaagaccucaggcugugacccucuagauggaagcacugucuguuguguaaaagaaaagAUCGUGCAUCCCUUUAGAGUGUuacuguuugagaaaagcaa
.(((...........)))(((((((.(((((.(((((((.(((.((((.((((.((.(.....).)).)))).)))).))).))))))).))))).)))))))........

Structure
ugucaaaaaaaagaagac       u     c       u   a    u    g  g g 
                  cucaggc gugac cucuaga gga gcac gucu uu u u
                  ||||||| ||||| ||||||| ||| |||| |||| || | a
                  gaguuug cauUG GAGAUUU CCU CGUG UAga aa a a
----------aacgaaaa       u     U       C   A    C    a  g a 


Annotation confidence Not enough data
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Genome context
chr19: 53054731-53054841 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ggo-mir-517c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-517c-3p

Accession MIMAT0036433
Description Gorilla gorilla ggo-miR-517c-3p mature miRNA
Sequence 71 - AUCGUGCAUCCCUUUAGAGUGU - 92
Evidence not_experimental

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116