miRBase entry: ggo-mir-516b-1

Stem-loop ggo-mir-516b-1

Accession

MI0020840

Description

Gorilla gorilla ggo-mir-516b-1 precursor miRNA

Sequence

gaauaucucaggcugugaccAUCUGGAGGUAAGAAGCACUUucuguuuugugaaagaaaagaaagugcuuccuuucagaggguuacucuuugagaaaagcaacguugaag
.....(((((((..((((((.((((((((...((((((((((((.((((.....)))).)))))))))))))))))))).))))))..)))))))...............

Structure

----------gaaua       cu      A        UAA            g    g 
               ucucagg  gugacc UCUGGAGG   GAAGCACUUucu uuuu u
               |||||||  |||||| ||||||||   |||||||||||| |||| g
               agaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
gaaguugcaacgaaa       cu      g        ---            a    a

Annotation confidence Not enough data

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Genome context

chr19: 53080303-53080412 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ggo-mir-516b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-516b

Accession	MIMAT0024292
Description	Gorilla gorilla ggo-miR-516b mature miRNA
Sequence	21 - AUCUGGAGGUAAGAAGCACUU - 41
Evidence	not_experimental

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116