miRBase entry: ggo-mir-450b

Stem-loop ggo-mir-450b

Accession

MI0020844

Description

Gorilla gorilla ggo-mir-450b precursor miRNA

Sequence

aauguaagaugcagaauuauUUUUGCAAUAUGUUCCUGAAUAuguaauauaaguguauugggaucauuuugcauccauaguuuuguaucaacauauggagaaaagucuagga
.((((..(((((((((((((...(((((.(((.((((((((((.........)))).)))))).))).)))))...))))))))))))).)))).((((......))))...

Structure

-----------------a    aa             UUU     U   U      -    gua 
                  augu  gaugcagaauuau   UGCAA AUG UCCUGA AUAu   a
                  ||||  |||||||||||||   ||||| ||| |||||| ||||   u
                  uaca  cuauguuuugaua   acguu uac aggguu ugug   a
aggaucugaaaagaggua    -a             ccu     u   u      a    aau

Annotation confidence Not enough data

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Genome context

chrX: 134595571-134595682 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ggo-mir-450b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-450b

Accession	MIMAT0024296
Description	Gorilla gorilla ggo-miR-450b mature miRNA
Sequence	21 - UUUUGCAAUAUGUUCCUGAAUA - 42
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116