miRBase entry: ppy-mir-378d

Stem-loop ppy-mir-378d


Accession
MI0020908
Description
Pongo pygmaeus ppy-mir-378d precursor miRNA


Sequence

agauaaaguacccacucaacuucuggucuaugguuuuuacugacauaaccaugaugugggggaaacaaACUGGACUUGGAGUCAGAauauuugguuucaaguccugacug
.(((.....(((...((.(((((.((((((..((((((.((.((((.......)))).))))))))....)))))).)))))..))......))).....))).......

Structure
------a   aaagu   ---cac  -a     u      --ug      a  g    aa 
       gau     acc      uc  acuuc ggucua    guuuuu cu acau  c
       |||     |||      ||  ||||| ||||||    |||||| || ||||  c
       cug     ugg      AG  UGAGG UCAGGU    caaagg gg ugua  a
gucaguc   aacuu   uuuaua  AC     U      CAaa      -  g    gu 


Annotation confidence Not enough data
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Genome context
chrX: 67980733-67980842 [-]

Database links

Mature ppy-miR-378d

Accession MIMAT0024360
Description Pongo pygmaeus ppy-miR-378d mature miRNA
Sequence 69 - ACUGGACUUGGAGUCAGA - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116