Stem-loop ppy-mir-548a

Accession

MI0020921

Description

Pongo pygmaeus ppy-mir-548a precursor miRNA

Literature search

1 open access papers mention ppy-mir-548a
(2 sentences)

Sequence

auuuaugcacugcagggagguauuaaguuggugcAAAAGUAAUUGUGGUUUUUGccacuaaaaguaaugacaaaacuggcaauuacuuuugcaccaaaccugauauuuuug
.....(((...))).((((((((((.((((((((((((((((((((.(.(((((.((.((....)).)).))))).).))))))))))))))))).))).)))))))))).

Structure

auuuaugcacugcag          a   -                 G U     c  c  a 
               ggagguauua guu ggugcAAAAGUAAUUGU G UUUUG ca ua a
               |||||||||| ||| ||||||||||||||||| | ||||| || ||  
               uuuuuauagu caa ccacguuuucauuaacg u aaaac gu au a
--------------g          c   a                 g c     a  a  g 

Annotation confidence Not enough data

Genome context

chr6: 19314533-19314643 [+]

Mature ppy-miR-548a

• Accession: MIMAT0024373
• Description: Pongo pygmaeus ppy-miR-548a mature miRNA
• Sequence: 35 - AAAAGUAAUUGUGGUUUUUG - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116