Stem-loop ppy-mir-4798

Accession

MI0020922

Description

Pongo pygmaeus ppy-mir-4798 precursor miRNA

Sequence

gcauaauaauaaaguacaacUUCGGUAUACUUUGUGAAUUGGcuuuuacaaaagaccaaaacaugaaguauacugaagucguacuuuauuacaacuaaaaaugguuugugaa
......(((((((((((.((((((((((((((((((..((((((((....)))).))))..)))))))))))))))))).))))))))))).(((((....)))))......

Structure

---------------gcauaa           a                  AA    -    u 
                     uaauaaaguac acUUCGGUAUACUUUGUG  UUGG cuuu a
                     ||||||||||| ||||||||||||||||||  |||| ||||  
                     auuauuucaug ugaagucauaugaaguac  aacc gaaa c
aaguguuugguaaaaaucaac           c                  aa    a    a 

Annotation confidence Not enough data

Genome context

chr4: 5728493-5728604 [-]

Mature ppy-miR-4798

• Accession: MIMAT0024374
• Description: Pongo pygmaeus ppy-miR-4798 mature miRNA
• Sequence: 21 - UUCGGUAUACUUUGUGAAUUGG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116