Stem-loop ppy-mir-3934

Accession

MI0020923

Description

Pongo pygmaeus ppy-mir-3934 precursor miRNA

Sequence

gcccuuccuguccccaauuuUCAGGUGUGGAAUCUGAGGCAggaagcagugaaguaacuugcucagguugcacagcugggaaguggagcagggauuuggauccuugugu
.((.(((((((..(((.(((((((.((((.((((((((.((((..((......))..)))))))))))).)))).))))))).))).)))))))...))..........

Structure

---------g  --c       cc   a       G    G        G    aa  ag 
          cc   uuccugu  cca uuuUCAG UGUG AAUCUGAG CAgg  gc  u
          ||   |||||||  ||| ||||||| |||| |||||||| ||||  ||   
          gg   agggacg  ggu aaggguc acac uuggacuc guuc  ug  g
uguguuccua  uuu       -a   g       g    g        -    aa  aa 

Annotation confidence Not enough data

Genome context

chr6: 33711181-33711289 [+]

Mature ppy-miR-3934

• Accession: MIMAT0024375
• Description: Pongo pygmaeus ppy-miR-3934 mature miRNA
• Sequence: 21 - UCAGGUGUGGAAUCUGAGGCA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116