Stem-loop ppy-mir-3940

Accession

MI0020929

Description

Pongo pygmaeus ppy-mir-3940 precursor miRNA

Sequence

gaccacgccaagcagcuuaucgaggaaaagaucgagguggguuggggcgggcucuggggguuuggucucaCAGCCCGGAUCCCAGCCCACUCAccuuggcuacucuucuuccu
......((((((.......((((........))))((((((((((((((((((.(((((......))))).))))))..))))))))))))...)))))).............

Structure

-------gaccac      cagcuuaucgaggaaaagaucga            --      c     gu 
             gccaag                       gguggguugggg  cgggcu ugggg  u
             ||||||                       ||||||||||||  |||||| |||||   
             cgguuc                       UCACCCGACCCU  GCCCGA acucu  u
uccuucuucucau      --------------------cAC            AG      C     gg 

Annotation confidence Not enough data

Genome context

chr19: 6467754-6467866 [-]

Mature ppy-miR-3940

• Accession: MIMAT0024381
• Description: Pongo pygmaeus ppy-miR-3940 mature miRNA
• Sequence: 71 - CAGCCCGGAUCCCAGCCCACUCA - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116