Stem-loop ppy-mir-4515

Accession

MI0020932

Description

Pongo pygmaeus ppy-mir-4515 precursor miRNA

Sequence

gcggccgcgggaguuguaacAGGACUGGACUCCCGGCGGCcccagggcaggggcguggggagcugguccuagcucagcgcucccggagguggagcuucugcaggcugggu
.(((((((((((((((....((((((((.(((((.(((.((((......))))))).)))))))))))))....))))((((((....).))))))))))).)))))...

Structure

--g     -      -----------------    uaac        A     G   G    ag 
   cggcc gcggga                 guug    AGGACUGG CUCCC GCG Cccc  g
   ||||| ||||||                 ||||    |||||||| ||||| ||| ||||   
   gucgg cgucuu                 cgac    uccugguc gaggg ugc gggg  g
ugg     a      cgagguggaggcccucg    ucga        -     g   -    ac 

Annotation confidence Not enough data

Genome context

chr15: 80513946-80514055 [+]

Mature ppy-miR-4515

• Accession: MIMAT0024384
• Description: Pongo pygmaeus ppy-miR-4515 mature miRNA
• Sequence: 21 - AGGACUGGACUCCCGGCGGC - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116