miRBase entry: ppy-mir-3154

Stem-loop ppy-mir-3154

Accession

MI0020950

Description

Pongo pygmaeus ppy-mir-3154 precursor miRNA

Sequence

ggccggcccccuccucaggccccuccuucucagccccagcucccgcucaccccugccacgucaaaggaggCAGAAGGGGAGUUGGGAGCAGagaggggaccacgggcuggcu
(((((((((........((((((((..(((..((((((((((((.((.....(((((.(......)..))))).)))))))))))).))))))))))).))..)))))))))

Structure

         ccuccuca  -      cu   ca  -          g  caccc     -a gu 
ggccggccc        gg ccccuc  ucu  gc cccagcuccc cu     cugcc  c  c
|||||||||        || ||||||  |||  || |||||||||| ||     |||||  |   
ucggucggg        cc ggggag  aGA  CG GGGUUGAGGG GA     GACgg  g  a
         ------ca  a      --   --  A          -  ----A     ag aa

Annotation confidence Not enough data

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Genome context

chr9: 125181208-125181319 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-3154

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-3154

Accession	MIMAT0024402
Description	Pongo pygmaeus ppy-miR-3154 mature miRNA
Sequence	71 - CAGAAGGGGAGUUGGGAGCAG - 91
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116