Stem-loop ppy-mir-2278

Accession

MI0020954

Description

Pongo pygmaeus ppy-mir-2278 precursor miRNA

Sequence

ugauucugcugcagguguugGAGGGCAGUGUGUGUUGUGUGGggacuguguggacagguaucacccagacagcuugcacugacuccagacccugcugucaugucacggguaa
((((...((.(((((.(((((((..((((((..(((((.((((((((((....))))...)).)))).)))))..)))))).))))).))))))).))...)))).......

Structure

-------    ucu  u     u  -     GG      GU     G    -  ---    g 
       ugau   gc gcagg gu ugGAG  CAGUGU  GUUGU UGGg ga   cugu u
       ||||   || ||||| || |||||  ||||||  ||||| |||| ||   ||||  
       acug   ug cgucc ca accuc  gucacg  cgaca accc cu   gaca g
aaugggc    uac  u     -  g     -a      uu     g    a  aug    g 

Annotation confidence Not enough data

Genome context

chr9: 90767932-90768043 [+]

Mature ppy-miR-2278

• Accession: MIMAT0024406
• Description: Pongo pygmaeus ppy-miR-2278 mature miRNA
• Sequence: 21 - GAGGGCAGUGUGUGUUGUGUGG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116