Stem-loop ppy-mir-378e

Accession

MI0020957

Description

Pongo pygmaeus ppy-mir-378e precursor miRNA

Sequence

aaccuggcucugccugacuccagcguccaggccaggggcagacaguggacagagaacagugcccaagaccACUGGACUUGGAGUCAGGacaucguuuuaacagcuuua
.....(((..(((((((((((((.((((((.....(((((....((.........))..))))).......))))))))))))))))).))..)))............

Structure

-------aaccu   uc  -           c      --gccag     gaca  gga 
            ggc  ug ccugacuccag guccag       gggca    gu   c
            |||  || ||||||||||| ||||||       |||||    ||   a
            uug  ac GGACUGAGGUU CAGGUC       cccgu    ca   g
auuucgacaauu   cu  a           -      Accagaa     --ga  aga 

Annotation confidence Not enough data

Genome context

chr5: 172723182-172723289 [+]

Mature ppy-miR-378e

• Accession: MIMAT0024409
• Description: Pongo pygmaeus ppy-miR-378e mature miRNA
• Sequence: 71 - ACUGGACUUGGAGUCAGG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116