miRBase entry: mse-mir-11

Stem-loop mse-mir-11

Accession

MI0020971

Description

Manduca sexta mse-mir-11 precursor miRNA

Sequence

aaauggagugaagcgcguuuuguggcuaggacuccgaccgugaguuguguguguguucaCAUCACAGUCAGAGUUCUAGCUauacggcguggaacaaaccac
...(((..((...((((((.((((((((((((((.(((.((((..((((........)))))))).))).)))))))))))))).))))))...))..))).

Structure

aaa   ag  aag      u              c   c    gu    ugu 
   ugg  ug   cgcguu uguggcuaggacuc gac guga  ugug   g
   |||  ||   |||||| |||||||||||||| ||| ||||  ||||    
   acc  ac   gugcgg auaUCGAUCUUGAG CUG CACU  ACac   u
--c   aa  aag      c              A   A    --    uug

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH668351.1: 968468-968569 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mse-mir-11

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mse-miR-11

Accession	MIMAT0024422
Description	Manduca sexta mse-miR-11 mature miRNA
Sequence	60 - CAUCACAGUCAGAGUUCUAGCU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 22406339
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
"Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
"Insect Biochem Mol Biol (2012) 42:381-395