miRBase entry: mse-mir-279b

Stem-loop mse-mir-279b

Accession

MI0020976

Description

Manduca sexta mse-mir-279b precursor miRNA

Sequence

aagacagaccugccacugguugcaguugauggguauaggucuaguaacacaguuuuaauauucugUGACUAGAUCUACACUCAUUGAuugcuuccaguu
..............(((((..(((((((((((((.((((((((((..(((((..(....)..))))))))))))))).)))))))))))))..))))).

Structure

aagacagaccugcc     uu             a          aa     uu u 
              acugg  gcaguugaugggu uaggucuagu  cacag  u a
              |||||  ||||||||||||| ||||||||||  |||||  |  
              ugacc  cguuAGUUACUCA AUCUAGAUCA  GUguc  a a
-------------u     uu             C          --     uu u

Annotation confidence Not enough data

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Genome context

JH668768.1: 163114-163212 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mse-mir-279b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mse-miR-279b

Accession	MIMAT0024427
Description	Manduca sexta mse-miR-279b mature miRNA
Sequence	66 - UGACUAGAUCUACACUCAUUGA - 87
Evidence	experimental Illumina [1]

References

PubMed ID: 22406339
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
"Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
"Insect Biochem Mol Biol (2012) 42:381-395