miRBase entry: mse-mir-34

Stem-loop mse-mir-34

Accession

MI0021025

Description

Manduca sexta mse-mir-34 precursor miRNA

Sequence

aaagaagauaagguuggccgcguUGGCAGUGUGGUUAGCUGGUUGUuuaugucauaacaacagccacuagcgacacugccucugcgugcaaccuaaagcaucg
..........((((((..((((..((((((((.(((((.(((((((...(((....))))))))))))))).))))))))..))))..)))))).........

Structure

aaagaagaua      gc    uU        G     C       uua   c 
          agguug  cgcg  GGCAGUGU GUUAG UGGUUGU   ugu a
          ||||||  ||||  |||||||| ||||| |||||||   |||  
          uccaac  gcgu  ccgucaca cgauc accgaca   aca u
-gcuacgaaa      gu    cu        g     -       ---   a

Annotation confidence Not enough data

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Genome context

JH668424.1: 260678-260780 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mse-mir-34

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mse-miR-34

Accession	MIMAT0024475
Description	Manduca sexta mse-miR-34 mature miRNA
Sequence	24 - UGGCAGUGUGGUUAGCUGGUUGU - 46
Evidence	experimental Illumina [1]

References

PubMed ID: 22406339
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
"Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
"Insect Biochem Mol Biol (2012) 42:381-395