miRBase entry: mse-mir-279d

Stem-loop mse-mir-279d

Accession

MI0021035

Description

Manduca sexta mse-mir-279d precursor miRNA

Sequence

uauaaacuugaugauuuuugugggcgaguuugcuucugguuucauguugccgaguaaccaUGACUAGAUCCAUACUCGUCUGCagccaucaacuuuaucuuc
.(((((.((((((....((((((((((((.((..(((((((....(((((...)))))...)))))))..)).)))))))))))).)))))).)))))....

Structure

---u     c      auuu            u  cu       ucau     c 
    auaaa uugaug    uugugggcgagu ug  ucugguu    guugc  
    ||||| ||||||    |||||||||||| ||  |||||||    ||||| g
    uauuu aacuac    gaCGUCUGCUCA AC  AGAUCAG    caaug  
cuuc     c      ---c            U  CU       -Uac     a

Annotation confidence Not enough data

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Genome context

JH668768.1: 162723-162824 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mse-mir-279d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mse-miR-279d

Accession	MIMAT0024485
Description	Manduca sexta mse-miR-279d mature miRNA
Sequence	61 - UGACUAGAUCCAUACUCGUCUGC - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 22406339
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
"Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
"Insect Biochem Mol Biol (2012) 42:381-395