miRBase entry: mse-mir-6096-2

Stem-loop mse-mir-6096-2

Accession

MI0021057

Description

Manduca sexta mse-mir-6096-2 precursor miRNA

Sequence

uuuauuaucgagugcuacagaacaucauugucgguggccugacucauaauaauuggaucaugucgucaAAUAUUAUGAGGUCGGUCAACGacaguggcgauca
...................((.(.(((((((((.(((((.(((((((((((.((((.........)))).)))))))).)))))))).))))))))).).)).

Structure

uuuauuaucgagugcuaca  a a         g     u   -        a    auc 
                   ga c ucauugucg uggcc gac ucauaaua uugg   a
                   || | ||||||||| ||||| ||| |||||||| ||||   u
                   cu g ggugacaGC ACUGG CUG AGUAUUAU Aacu   g
------------------a  a c         A     -   G        A    gcu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH668665.1: 29770-29872 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mse-mir-6096-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mse-miR-6096

Accession	MIMAT0024504
Description	Manduca sexta mse-miR-6096 mature miRNA
Sequence	69 - AAUAUUAUGAGGUCGGUCAACG - 90
Evidence	experimental Illumina [1]

References

PubMed ID: 22406339
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
"Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
"Insect Biochem Mol Biol (2012) 42:381-395