miRBase entry: cca-MIR319

Stem-loop cca-MIR319


Accession
MI0021076
Description
Cynara cardunculus cca-MIR319 precursor miRNA


Sequence

auaauggaagaauuagagggagcuuccuucaguccacucauagguggguagaggguauggauuugcugccgacucauucauucaaacacaauaguaccauuguaguuugaacauacuauugugacugugugaaugaugcgggagacgaaucugauccuauccugauuguggUUGGACUGAAGGGAGCUCCCUuguugu
...............(((((((((((((((((((((.((((((.((((...(((((..(((((((((.(((..((((((((.((..((((((((((....(((.......)))))))))))))..)).))))))))..))).)).))))))).)))))..)))).)))))).))))))))))))))))))))).....

Structure
auaauggaagaauua                     c      g    uag     au       -  g   ac        u  aa          ccau   ag 
               gagggagcuuccuucagucca ucauag uggg   agggu  ggauuug cu ccg  ucauucau ca  cacaauagua    ugu  u
               ||||||||||||||||||||| |||||| ||||   |||||  ||||||| || |||  |||||||| ||  ||||||||||    |||  u
               uUCCCUCGAGGGAAGUCAGGU gguguu gucc   uccua  ucuaagc ga ggc  aguaagug gu  guguuaucau    aca  u
----------uguug                     U      a    -ua     -g       a  g   gu        u  ca          ----   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR319

Accession MIMAT0024522
Description Cynara cardunculus cca-miR319 mature miRNA
Sequence 172 - UUGGACUGAAGGGAGCUCCCU - 192
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41