Stem-loop cca-MIR6111

Accession

MI0021099

Description

Cynara cardunculus cca-MIR6111 precursor miRNA

Literature search

1 open access papers mention cca-MIR6111
(2 sentences)

Sequence

uuggagcUCUUUAUGUCACGAUGUAUGACucuuuguuacugguuccaaaggauuaugaagguagucuagcccacagacaacauaaaugcauaucuugagacaucaguucacaugagacucgugccuccaacaauggauuguucgagucucacgugagaacccgaugucucaagauagguguugguguugugcguggguuagcuuaucaucauaauccuuugucaucgcaacaaggaguCAUGCAUGGUGAUAUAAAUAGCccuaaca
..((.(((.((((((((((.(((((((((((((((((..((((..(((((((((((((.(((((.(((((((((..(((((((.(((((.((((((((((((((..(((((.(((((((((.((.((((....))))..)).))))))))).))))).....)))))))))))))).))))).)))))))..))))))))).))))).)))))))))))))..)))).))))))))))))))))).)))))))))).))))).....

Structure

---uu  a   C          G                 ac    uc             a     u         ag       a     a              ---ag     a         u  -c    a 
     gg gcU UUUAUGUCAC AUGUAUGACucuuuguu  uggu  caaaggauuauga gguag cuagcccac  acaacau aaugc uaucuugagacauc     uucac ugagacucg gc  ucca c
     || ||| |||||||||| |||||||||||||||||  ||||  ||||||||||||| ||||| |||||||||  ||||||| ||||| ||||||||||||||     ||||| ||||||||| ||  ||||  
     cc CGA AAAUAUAGUG UACGUACugaggaacaa  gcua  guuuccuaauacu cuauu gauugggug  uguugug uugug auagaacucuguag     gagug acucugagc ug  aggu a
acaau  -   U          G                 -c    cu             a     c         cg       g     g              cccaa     c         u  uu    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6111-5p

• Accession: MIMAT0024549
• Description: Cynara cardunculus cca-miR6111-5p mature miRNA
• Sequence: 8 - UCUUUAUGUCACGAUGUAUGAC - 29
• Evidence: experimental ; Illumina [1]

Mature cca-miR6111-3p

• Accession: MIMAT0024550
• Description: Cynara cardunculus cca-miR6111-3p mature miRNA
• Sequence: 239 - CAUGCAUGGUGAUAUAAAUAGC - 260
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41